Yuri. I. Wolf: search on Z-Library

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1

Classification and Nomenclature of CRISPR-Cas Systems: Where from Here?

Makarova, Kira S., Wolf, Yuri I., Koonin, Eugene V.

Journal:

The CRISPR Journal

Year:

2018

Language:

english

File:

PDF, 4.36 MB

english, 2018

2

Evolution and classification of the CRISPR–Cas systems

Makarova, Kira S., Haft, Daniel H., Barrangou, Rodolphe, Brouns, Stan J. J., Charpentier, Emmanuelle, Horvath, Philippe, Moineau, Sylvain, Mojica, Francisco J. M., Wolf, Yuri I., Yakunin, Alexander F.

Journal:

Nature Reviews Microbiology

Year:

2011

Language:

english

File:

PDF, 726 KB

english, 2011

3

Dark matter in archaeal genomes: a rich source of novel mobile elements, defense systems and secretory complexes

Makarova, Kira S., Wolf, Yuri I., Forterre, Patrick, Prangishvili, David, Krupovic, Mart, Koonin, Eugene V.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.28 MB

english, 2014

4

Entropy as an indicator of sustainability in agro-ecosystems: North Germany case study

Wolf Steinborn, Yuri Svirezhev

Journal:

Ecological Modelling

Year:

2000

Language:

english

File:

PDF, 580 KB

english, 2000

5

Towards physical principles of biological evolution

Katsnelson, Mikhail I, Wolf, Yuri I, Koonin, Eugene V

Journal:

Physica Scripta

Year:

2018

Language:

english

File:

PDF, 1.11 MB

english, 2018

6

Physical foundations of biological complexity

Wolf, Yuri I., Katsnelson, Mikhail I., Koonin, Eugene V.

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 843 KB

english, 2018

7

The common ancestry of life

Eugene V Koonin, Yuri I Wolf

Journal:

Year:

2010

Language:

english

File:

PDF, 397 KB

english, 2010

8

Monodisperse Poly(3,4-ethylenedioxythiophene)–Silica Microspheres: Synthesis and Assembly into Crystalline Colloidal Arrays

Timothy L. Kelly, Yuri Yamada, Sara P. Y. Che, Kazuhisa Yano, Michael O. Wolf

Journal:

Advanced Materials

Year:

2008

Language:

english

File:

PDF, 233 KB

english, 2008

9

Classify viruses — the gain is worth the pain

Kuhn, Jens H., Wolf, Yuri I., Krupovic, Mart, Zhang, Yong-Zhen, Maes, Piet, Dolja, Valerian V., Koonin, Eugene V.

Journal:

Year:

2019

Language:

english

File:

PDF, 2.28 MB

english, 2019

10

Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants

Makarova, Kira S., Wolf, Yuri I., Iranzo, Jaime, Shmakov, Sergey A., Alkhnbashi, Omer S., Brouns, Stan J. J., Charpentier, Emmanuelle, Cheng, David, Haft, Daniel H., Horvath, Philippe, Moineau, Sylvai

Journal:

Nature Reviews Microbiology

Year:

2019

File:

PDF, 2.42 MB

2019

11

Genome reduction as the dominant mode of evolution

Wolf, Yuri I., Koonin, Eugene V.

Journal:

Year:

2013

Language:

english

File:

PDF, 190 KB

english, 2013

12

Classification and evolution of P-loop GTPases and related ATPases

Detlef D Leipe, Yuri I Wolf, Eugene V Koonin, L Aravind

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 1.61 MB

english, 2002

13

Methane Clathrates in the Solar System

Mousis, Olivier, Chassefière, Eric, Holm, Nils G., Bouquet, Alexis, Waite, Jack Hunter, Geppert, Wolf Dietrich, Picaud, Sylvain, Aikawa, Yuri, Ali-Dib, Mohamad, Charlou, Jean-Luc, Rousselot, Philippe

Journal:

Year:

2015

Language:

english

File:

PDF, 986 KB

english, 2015

14

Integrated Management of Land Use Systems under Systemic Risks and Security Targets: A Stochastic Global Biosphere Management Model

Ermolieva, Tatiana, Havlík, Petr, Ermoliev, Yuri, Mosnier, Aline, Obersteiner, Michael, Leclère, David, Khabarov, Nikolay, Valin, Hugo, Reuter, Wolf

Journal:

Journal of Agricultural Economics

Year:

2016

Language:

english

File:

PDF, 525 KB

english, 2016

15

Machine-learning approach expands the repertoire of anti-CRISPR protein families

Gussow, Ayal B., Park, Allyson E., Borges, Adair L., Shmakov, Sergey A., Makarova, Kira S., Wolf, Yuri I., Bondy-Denomy, Joseph, Koonin, Eugene V.

Journal:

Nature Communications

Year:

2020

File:

PDF, 843 KB

2020

16

Pseudo-chaotic oscillations in CRISPR-virus coevolution predicted by bifurcation analysis

Faina S Berezovskaya,Yuri I Wolf,Eugene V Koonin,Georgy P Karev

Journal:

Year:

2014

Language:

english

File:

PDF, 1.75 MB

english, 2014

17

The origins of phagocytosis and eukaryogenesis

Natalya Yutin, Maxim Y Wolf, Yuri I Wolf, Eugene V Koonin

Journal:

Year:

2009

Language:

english

File:

PDF, 1.05 MB

english, 2009

18

An updated evolutionary classification of CRISPR–Cas systems

Makarova, Kira S., Wolf, Yuri I., Alkhnbashi, Omer S., Costa, Fabrizio, Shah, Shiraz A., Saunders, Sita J., Barrangou, Rodolphe, Brouns, Stan J. J., Charpentier, Emmanuelle, Haft, Daniel H., Horvath,

Journal:

Nature Reviews Microbiology

Year:

2015

Language:

english

File:

PDF, 531 KB

english, 2015

19

Mutationâselection balance and compensatory mechanisms in tumour evolution

Persi, Erez, Wolf, Yuri I., Horn, David, Ruppin, Eytan, Demichelis, Francesca, Gatenby, Robert A., Gillies, Robert J., Koonin, Eugene V.

Journal:

Nature Reviews Genetics

Year:

2020

File:

PDF, 1.23 MB

2020

20

Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems

Kira S Makarova, L Aravind, Yuri I Wolf, Eugene V Koonin

Journal:

Year:

2011

Language:

english

File:

PDF, 2.97 MB

english, 2011

21

Diversity and evolution of class 2 CRISPR–Cas systems

Shmakov, Sergey, Smargon, Aaron, Scott, David, Cox, David, Pyzocha, Neena, Yan, Winston, Abudayyeh, Omar O., Gootenberg, Jonathan S., Makarova, Kira S., Wolf, Yuri I., Severinov, Konstantin, Zhang, Fe

Journal:

Nature Reviews Microbiology

Year:

2017

Language:

english

File:

PDF, 634 KB

english, 2017

22

Rickettsiae and Chlamydiae: evidence of horizontal gene transfer and gene exchange

Yuri I. Wolf, L. Aravind, Eugene V. Koonin

Journal:

Trends in Genetics

Year:

1999

Language:

english

File:

PDF, 117 KB

english, 1999

23

Genome trees and the tree of life

Yuri I. Wolf, Igor B. Rogozin, Nick V. Grishin, Eugene V. Koonin

Journal:

Trends in Genetics

Year:

2002

Language:

english

File:

PDF, 64 KB

english, 2002

24

A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action

Kira S Makarova, Nick V Grishin, Svetlana A Shabalina, Yuri I Wolf, Eugene V Koonin

Journal:

Year:

2006

Language:

english

File:

PDF, 884 KB

english, 2006

25

Small Proteins Can No Longer Be Ignored

Storz, Gisela, Wolf, Yuri I., Ramamurthi, Kumaran S.

Journal:

Annual Review of Biochemistry

Year:

2014

Language:

english

File:

PDF, 1.13 MB

english, 2014

26

Estimating the number of protein folds and families from complete genome data

Yuri I Wolf, Nick V Grishin, Eugene V Koonin

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 210 KB

english, 2000

27

Is evolution Darwinian or/and Lamarckian?

Eugene V Koonin, Yuri I Wolf

Journal:

Year:

2009

Language:

english

File:

PDF, 356 KB

english, 2009

28

Evolution of the CRISPR-Cas adaptive immunity systems in prokaryotes: models and observations on virus–host coevolution

Koonin, Eugene V., Wolf, Yuri I.

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.91 MB

english, 2015

29

Stable coevolutionary regimes for genetic parasites and their hosts: you must differ to coevolve

Berezovskaya, Faina, Karev, Georgy P., Katsnelson, Mikhail I., Wolf, Yuri I., Koonin, Eugene V.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.65 MB

english, 2018

30

Finding Eigenvalues of Holomorphic Fredholm Operator Pencils Using Boundary Value Problems and Contour Integrals

Beyn, Wolf-Jürgen, Latushkin, Yuri, Rottmann-Matthes, Jens

Journal:

Integral Equations and Operator Theory

Year:

2014

Language:

english

File:

PDF, 948 KB

english, 2014

31

Photosystem I gene cassettes are present in marine virus genomes

Alperovitch, Ariella, Rohwer, Forest, Haynes, Matthew, Sharon, Itai, Glaser, Fabian, Atamna-Ismaeel, Nof, Pinter, Ron Y., Partensky, Frédéric, Koonin, Eugene V., Wolf, Yuri I.

Journal:

Year:

2009

Language:

english

File:

PDF, 780 KB

english, 2009

32

The complexity of the virus world

Koonin, Eugene V., Wolf, Yuri I., Nagasaki, Keizo, Dolja, Valerian V.

Journal:

Nature Reviews Microbiology

Year:

2009

Language:

english

File:

PDF, 116 KB

english, 2009

33

No footprints of primordial introns in a eukaryotic genome

Yuri I. Wolf, Fyodor A. Kondrashov, Eugene V. Koonin

Journal:

Trends in Genetics

Year:

2000

Language:

english

File:

PDF, 153 KB

english, 2000

34

Short repeats and IS elements in the extremely radiation-resistant bacterium Deinococcus radiodurans and comparison to other bacterial species

Kira S Makarova, Yuri I Wolf, Owen White, Ken Minton, Michael J Daly

Journal:

Research in Microbiology

Year:

1999

Language:

english

File:

PDF, 1.09 MB

english, 1999

35

[1,2,5]Thiadiazolo[3,4-c][1,2,5]thiadiazolidyl: A Long-Lived Radical Anion and Its Stable Salts †

Makarov, Alexander Yu., Irtegova, Irina G., Vasilieva, Nadezhda V., Bagryanskaya, Irina Yu., Borrmann, Tobias, Gatilov, Yuri V., Lork, Enno, Mews, Ruediger, Stohrer, Wolf-Dieter, Zibarev, Andrey V.

Journal:

Inorganic Chemistry

Year:

2005

Language:

english

File:

PDF, 200 KB

english, 2005

36

Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer

Yuri I Wolf, Kira S Makarova, Natalya Yutin, Eugene V Koonin

Journal:

Year:

2012

Language:

english

File:

PDF, 314 KB

english, 2012

37

SPIE Proceedings [SPIE Photonics East '95 - Philadelphia, PA (Sunday 22 October 1995)] Mobile Robots X - Accuracy of point light target coordinate determination by dissectoral tracking system

Martishevcky, Yuri V., Wolfe, William J., Kenyon, Chase H.

Year:

1995

Language:

english

File:

PDF, 226 KB

english, 1995

38

Interaction between the FTO gene, body mass index and depression: meta-analysis of 13701 individuals

Rivera, Margarita, Locke, Adam E., Corre, Tanguy, Czamara, Darina, Wolf, Christiane, Ching-Lopez, Ana, Milaneschi, Yuri, Kloiber, Stefan, Cohen-Woods, Sara, Rucker, James, Aitchison, Katherine J., Ber

Journal:

The British Journal of Psychiatry

Year:

2017

Language:

english

File:

PDF, 784 KB

english, 2017

39

Histidine-Triad Hydrolases Provide Resistance to Peptide-Nucleotide Antibiotics

Yagmurov, Eldar, Tsibulskaya, Darya, Livenskyi, Alexey, Serebryakova, Marina, Wolf, Yury I., Borukhov, Sergei, Severinov, Konstantin, Dubiley, Svetlana, Gottesman, Susan

Journal:

Year:

2020

File:

PDF, 1.82 MB

2020

40

Selection for Reducing Energy Cost of Protein Production Drives the GC Content and Amino Acid Composition Bias in Gene Transfer Agents

Kogay, Roman, Wolf, Yuri I., Koonin, Eugene V., Zhaxybayeva, Olga, Giovannoni, Stephen J.

Journal:

Year:

2020

File:

PDF, 529 KB

2020

41

Modified base-binding EVE and DCD domains: striking diversity of genomic contexts in prokaryotes and predicted involvement in a variety of cellular processes

Bell, Ryan T., Wolf, Yuri I., Koonin, Eugene V.

Journal:

Year:

2020

File:

PDF, 6.55 MB

2020

42

The Big Bang of picorna-like virus evolution antedates the radiation of eukaryotic supergroups

Koonin, Eugene V., Wolf, Yuri I., Nagasaki, Keizo, Dolja, Valerian V.

Journal:

Nature Reviews Microbiology

Year:

2008

Language:

english

File:

PDF, 614 KB

english, 2008

43

[ACM Press the third annual international conference - Lyon, France (1999.04.11-1999.04.14)] Proceedings of the third annual international conference on Computational molecular biology - RECOMB '99 - Winnowing sequences from a database search

Berman, Piotr, Zhang, Zheng, Wolf, Yuri I., Koonin, Eugene V., Miller, Webb

Year:

1999

Language:

english

File:

PDF, 1.17 MB

english, 1999

44

Positive and strongly relaxed purifying selection drive the evolution of repeats in proteins

Persi, Erez, Wolf, Yuri I., Koonin, Eugene V

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.17 MB

english, 2016

45

Relative Contributions of Intrinsic Structural–Functional Constraints and Translation Rate to the Evolution of Protein-Coding Genes

Wolf, Yuri I., Gopich, Irina V., Lipman, David J., Koonin, Eugene V.

Journal:

Genome Biology and Evolution

Year:

2010

Language:

english

File:

PDF, 858 KB

english, 2010

46

Gene gain and loss push prokaryotes beyond the homologous recombination barrier and accelerate genome sequence divergence

Iranzo, Jaime, Wolf, Yuri I., Koonin, Eugene V., Sela, Itamar

Journal:

Nature Communications

Year:

2019

File:

PDF, 947 KB

2019

47

Origin of an animal mitochondrial DNA polymerase subunit via lineage-specific acquisition of a glycyl-tRNA synthetase from bacteria of the Thermus–Deinococcus group

Yuri I. Wolf, Eugene V. Koonin

Journal:

Trends in Genetics

Year:

2001

Language:

english

File:

PDF, 142 KB

english, 2001

48

Universal Pacemaker of Genome Evolution

Snir, Sagi, Wolf, Yuri I., Koonin, Eugene V., Snel, Berend

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 482 KB

english, 2012

49

Predictability of Evolutionary Trajectories in Fitness Landscapes

Lobkovsky, Alexander E., Wolf, Yuri I., Koonin, Eugene V., Shakhnovich, Eugene I.

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 982 KB

english, 2011

50

Mapping vaccinia virus DNA replication origins at nucleotide level by deep sequencing

Senkevich, Tatiana G., Bruno, Daniel, Martens, Craig, Porcella, Stephen F., Wolf, Yuri I., Moss, Bernard

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 985 KB

english, 2015

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